PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG476100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRF
Protein Properties Length: 262aa    MW: 27080.2 Da    PI: 5.0801
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG476100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.74.3e-23172216145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          ++epgrCrRtDGKkWRC+r +++++k+CErH+hrgr+r  + ++e
  Pavir.2NG476100.1.p 172 EPEPGRCRRTDGKKWRCWRSTIPNEKYCERHMHRGRKRPVQLVVE 216
                          69************************************9998875 PP

2QLQ54.34e-19106141237
                  QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          aFTa+Qlq+L++Q  +y+y+aa++PvP +L+++i+k
  Pavir.2NG476100.1.p 106 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 141
                          8*********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.7E-8105141IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.1E-12106140IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.922106141IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.471172216IPR014977WRC domain
PfamPF088799.9E-20173211IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAAEGEAKNP SGGGGGGGGG GGVDNPQVEV APSAAAPAEG EAVVAAAQGT GQGPEGEKAD  60
REGEKDDGAC RDLVLVEDPE EAAATAALQE EMKALVASIP GGAGAAFTAM QLQELEQQSR  120
VYQYMAARVP VPTHLVFPIW KSVTGASSEG AQKYPTLMGL ATLCLDFGKN PEPEPGRCRR  180
TDGKKWRCWR STIPNEKYCE RHMHRGRKRP VQLVVEDDEP DSASGSKTTA GKATEGAKKA  240
DDKSPSNKKL AVAAPAAVQS I*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.206870.0leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425130.0BT042513.1 Zea mays full-length cDNA clone ZM_BFb0310G14 mRNA, complete cds.
GenBankBT0874370.0BT087437.1 Zea mays full-length cDNA clone ZM_BFb0076N13 mRNA, complete cds.
GenBankEF5158490.0EF515849.1 Zea mays putative growth-regulating factor 10 (GRF10) mRNA, complete cds.
GenBankEU9606010.0EU960601.1 Zea mays clone 226522 growth-regulating factor mRNA, complete cds.
GenBankKJ7268740.0KJ726874.1 Zea mays clone pUT3415 GRF transcription factor (GRF3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957654.11e-156PREDICTED: growth-regulating factor 11-like
SwissprotQ6AWX81e-127GRF11_ORYSJ; Growth-regulating factor 11
TrEMBLK3ZW281e-156K3ZW28_SETIT; Uncharacterized protein
STRINGSi030809m1e-156(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67353152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-30growth-regulating factor 5